Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CCK78786.1Putative transposase, fragment. (533 aa)    
Predicted Functional Partners:
CCK82243.1
Conserved uncharacterized protein; Signal peptide.
  
     0.728
CCK79153.1
Putative ppGpp synthesis/degradation protein, RelA domain.
  
     0.675
CCK81912.1
TonB-dependent receptor; Signal peptide.
  
     0.652
cyaA2
Cya: adenylate cyclase.
  
     0.556
CCK80570.1
Conserved uncharacterized protein.
  
     0.546
CCK82093.1
Conserved uncharacterized protein; Signal peptide.
  
     0.507
CCK81748.1
Tetratricopeptide repeat protein.
  
     0.503
CCK81448.1
HipA domain protein.
  
     0.500
CCK80044.1
TRP-repeat-containing protein with CheY-like response regulator receiver domain.
  
     0.494
flgK
FlgK: putative flagellar hook-associated protein 1; Belongs to the flagella basal body rod proteins family.
  
     0.488
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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