Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CCK78823.1Conserved uncharacterized protein. (327 aa)    
Predicted Functional Partners:
CCK78822.1
Uncharacterized protein.
       0.773
hsdR
HsdR: type I site-specific deoxyribonuclease.
  
    0.585
hsdR2
HsdR2: type I site-specific deoxyribonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.585
CCK78350.1
Putative restriction modification system, type I.
  
    0.561
CCK79443.1
Uncharacterized protein.
  
    0.561
CCK78187.1
Putative type-1 restriction enzyme EcoKI specificity protein.
  
    0.560
hsdS
HsdS: type I restriction modification system methylase.
  
    0.549
CCK78186.1
N-6 adenine-specific DNA methylase.
  
    0.537
hsdM
HsdM: predicted type I restriction modification system, M subunit.
  
    0.537
CCK78349.1
N-6 adenine specific DNA methylase.
  
    0.534
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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