Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CCK78871.1Type II and III secretion system protein; Signal peptide. (565 aa)    
Predicted Functional Partners:
gspF
GspF: predicted general secretion pathway protein F.
 
 
 
 0.945
pilN
PilN: fimbrial assembly protein; Signal anchor.
 
 
 0.942
gspE
GspE: putative general secretion pathway protein E.
 
 
 
 0.939
pilM
PilM: type IV pilus assembly protein.
 
 
 0.915
pilO
PilO: pilus assembly protein; Signal anchor.
 
 
 0.910
CCK78868.1
Conserved uncharacterized protein.
  
 
 0.898
pilP
PilP: pilus assembly protein; Signal peptide.
  
 
 0.894
lysM
LysM: peptidoglycan-binding protein; Signal peptide.
 
 
 
 0.865
CCK78872.1
Putative type II secretory pathway component ExeA.
 
     0.856
CCK78875.1
Uncharacterized protein; Signal peptide.
 
  
 0.801
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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