Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
gspEGspE: putative general secretion pathway protein E. (568 aa)    
Predicted Functional Partners:
gspF
GspF: predicted general secretion pathway protein F.
 
 
 0.986
gspF-2
GspF: general secretion pathway protein F.
 
 
 0.945
pilC
PilC: type 4 fimbrial assembly protein.
 
 0.943
CCK78871.1
Type II and III secretion system protein; Signal peptide.
 
 
 
 0.939
CCK78875.1
Uncharacterized protein; Signal peptide.
 
 
 0.895
pilD
PilD: type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.850
CCK78868.1
Conserved uncharacterized protein.
  
 
 0.830
gspG
GspG: general secretion pathway protein G; Signal anchor.
 
 
 0.805
CCK78872.1
Putative type II secretory pathway component ExeA.
     
 0.798
CCK78869.1
Uncharacterized protein; Signal anchor.
       0.736
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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