Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CCK78962.1Putative transposase, YhgA-like. (340 aa)    
Predicted Functional Partners:
CCK79009.1
Conserved uncharacterized protein.
  
     0.603
CCK78998.1
Conserved uncharacterized protein.
  
     0.572
CCK78963.1
Capsular polysacchararide biosynthesis protein CapD, fragment.
       0.565
CCK78964.1
Uncharacteroized protein; Signal peptide.
       0.565
CCK78960.1
Conserved uncharacterized protein.
       0.563
CCK78961.1
Conserved uncharacterized protein.
       0.563
CCK80222.1
Predicted antitoxin of toxin-antitoxin stability system; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
     0.404
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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