Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCK78992.1Uncharacterized putative membrane protein. (134 aa)    
Predicted Functional Partners:
capD2
CapD2: UDP-glucose 4-epimerase.
       0.773
CCK78989.1
NAD-dependent epimerase/dehydratase.
       0.658
CCK78990.1
UDP-sulfoquinovose synthase.
       0.658
CCK78993.1
Conserved uncharacterized protein.
       0.468
CCK78988.1
Conserved uncharacterized protein.
       0.446
CCK78986.1
Uncharacterized 4Fe-4S cluster protein.
       0.428
CCK78987.1
Predicted integral membrane protein involved in polysaccharide production.
       0.428
CCK78994.1
Predicted lysozyme.
       0.411
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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