STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CCK79061.1Ureidoglycolate lyase (Ureidoglycolase). (269 aa)    
Predicted Functional Partners:
CCK80311.1
2-dehydro-3-deoxyglucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.568
gapN
GapN: NADP-dependent glycerinaldehyde-3-phsophate dehydrogenase.
  
 
 0.545
polA
PolA: DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.474
fadB
FadB: 3-hydroxyacyl-CoA dehydrogenase, NAD-binding.
  
  
 0.469
gabT
GabT: 4-aminobutyrate aminotransferase (Gamma-amino-N-butyrate transaminase); Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
 
 0.465
tdh
Tdh: L-threonine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family.
  
 
 0.464
pheA
PheA: P-protein (includes: chorismate mutase and prephenate dehydratase).
     
 0.447
tyrA
TyrA: T-protein [includes: chorismate mutase; prephenate dehydrogenase].
     
 0.446
CCK82138.1
Fusion protein: glycine cleavage T-protein and glycine hydroxymethyltransferase.
  
  
 0.446
CCK82006.1
Fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
 
    0.428
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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