Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CCK79135.1MmgE/PrpD family protein. (446 aa)    
Predicted Functional Partners:
prpB
PrpB: predicted methylisocitrate lyase.
 
  
 0.954
prpF
PrpF: predicted 3-methylitaconate isomerase.
  
 0.931
gltA
GltA: citrate synthase; Belongs to the citrate synthase family.
  
  
 0.795
gltA2
GltA2: citrate synthase, type II; Belongs to the citrate synthase family.
  
  
 0.795
CCK79136.1
Putative sensor protein, fragment.
       0.705
CCK79137.1
Predicted ABC-type transport system, periplasmic binding protein; Signal peptide.
       0.664
pccB
PccB: propionyl-CoA carboxylase, beta subunit.
  
    0.589
CCK81979.1
Carboxyl transferase.
  
    0.589
creD
CreD: inner membrane protein.
   
    0.558
fumB
FumB: fumarate hydratase class I (fumarase); Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
  
 0.552
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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