Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rpoERpoE: RNA polymerase sigma-E factor (sigma24); Belongs to the sigma-70 factor family. ECF subfamily. (196 aa)    
Predicted Functional Partners:
CCK79231.1
Conserved uncharacterized protein.
  
 
 0.952
rpoB
RpoB: DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.775
rpoC
RpoC: DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.771
rpoA
RpoA: DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.762
CCK82397.1
RNA polymerase sigma factor related to sigma70; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.761
rpoZ
RpoZ: DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.692
CCK79139.1
MCP methyltransferase/methylesterase, CheR/CheB-like with PAS/PAC sensor domain.
  
 
 0.648
CCK79233.1
Uncharacterized protein; Signal peptide.
       0.607
CCK79230.1
Conserved uncharacterized protein; Signal peptide.
       0.598
CCK79821.1
Uncharacterized protein.
  
 
 0.588
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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