Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fadRFadR: transcriptional regulator, TetR family. (209 aa)    
Predicted Functional Partners:
CCK78844.1
Transcriptional regulator, TetR family.
  
     0.602
fadF
FadF: predicted uncharacterized protein fadF.
 
   
 0.569
CCK79291.1
Putative ketose-bisphosphate aldolase family protein.
 
   
 0.555
CCK81883.1
Transcriptional regulator, TetR family.
  
     0.492
CCK81789.1
Predicted polyketide synthase.
     
 0.483
pth
Pth: peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.438
pfaA
PfaA: polyketide-type polyunsaturated fatty acid synthase.
     
 0.432
etfA3
EtfA3: electron transfer flavoprotein, alpha subunit.
  
  
 0.401
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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