Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCK79297.1Uncharacterized protein related to FlpD, Fe-S cluster. (315 aa)    
Predicted Functional Partners:
CCK78433.1
Predicted CoB--CoM heterodisulfide reductase, subunit B.
 
 
 0.933
glcD
GlcD: (S)-2-hydroxy-acid oxidase (glycolate oxidase), delta subunit.
 
  
 0.928
CCK79472.1
Conserved uncharacterized protein.
   
 
 0.863
dsrC
DsrC: sulfite reductase, dissimilatory-type, gamma subunit.
   
 
 0.863
hysB
HysB: periplasmic [NiFeSe] hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
  
 
 0.848
CCK79057.1
Predicted FAD-dependent hydrogenase/oxidoreductase.
 
 
 0.811
hdlB
HdlB: heterodisulfide reductase-like protein, subunit B.
 
 
 0.793
CCK79296.1
Conserved uncharacterized protein.
 
     0.776
hdlA4
HdlA4: heterodisulfide reductase-like protein, iron-sulfur subunit.
 
 
 0.713
hdlA1
HdlA1: heterodisulfide reductase-like protein, iron-sulfur subunit.
 
 
 0.709
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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