Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
creDCreD: inner membrane protein. (443 aa)    
Predicted Functional Partners:
CCK80679.1
Uncharacterized lipoprotein.
  
     0.567
CCK79135.1
MmgE/PrpD family protein.
   
    0.558
pbpC
PbpC: penicillin-binding protein 1C 2.4.2.-.
  
     0.543
CCK79446.1
Fusion protein (methyltransferase type 12 and tetratricopeptide TPR-1+TPR-2).
       0.467
CCK80990.1
Geranylgeranyl reductase.
   
  
 0.467
CCK81012.1
Geranylgeranyl reductase.
   
  
 0.467
CCK79443.1
Uncharacterized protein.
  
    0.446
CCK79442.1
Conserved uncharacterized protein related to HipA.
 
     0.445
CCK79444.1
Uncharacterized protein.
       0.433
CCK81934.1
Conserved uncharacterized protein; Signal peptide.
 
     0.411
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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