STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacCDacC: predicted peptidase S13, D-Ala-D-Ala carboxypeptidase C. (409 aa)    
Predicted Functional Partners:
CCK80121.1
Predicted beta-lactamase.
 
  
 0.935
CCK80120.1
Peptidase, S66 family, LD-carboxypeptidase A.
 
  
 0.801
mrdB
MrdB: rod shape-determining protein rodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
     
 0.558
CCK81302.1
Conserved uncharacterized protein, DUF1343.
  
     0.467
apeA
ApeA: predicted aminopeptidase I, M18 family.
       0.442
CCK78775.1
Conserved uncharacterized protein; Signal peptide.
  
     0.441
nagZ
NagZ: beta-N-acetylhexosaminidase.
 
   
 0.432
mpl
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
   
 0.414
mltA
MltA: membrane-bound lytic murein transglycosylase A homolog (murein hydrolase A).
  
   
 0.411
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.