Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
gspF-2GspF: general secretion pathway protein F. (405 aa)    
Predicted Functional Partners:
gspE
GspE: putative general secretion pathway protein E.
 
 
 0.945
gspE2
GspE2: general secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.945
gspE-2
GspE: general secretion pathway protein E.
 
 
 0.943
pilB
PilB: type IV pilus asse,nly protein.
 
 
 0.934
pilD
PilD: type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.882
gspG
GspG: general secretion pathway protein G; Signal anchor.
 
  
 0.880
pilT
PilT: twitching motility protein.
 
  
 0.805
pilT2
PilT2: twitching motility protein.
 
  
 0.805
pilT3
PilT3: twitchung motility proteIN.
 
  
 0.805
pilM
PilM: type IV pilus assembly protein.
 
 
 
 0.769
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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