Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
atoCAtoC: acetoacetate metabolism regulatory protein. (453 aa)    
Predicted Functional Partners:
CCK79670.1
Two component system sensor histidine kinase.
 
 0.944
atoS
AtoS: two component system sensor histidine kinase.
 
 
 
 0.925
btuE
BtuE: predicted vitamin B12 transporter; Signal peptide.
 
     0.818
CCK79557.1
Conserved uncharacterized protein.
 
     0.775
rpoN
RpoN: RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.645
CCK81773.1
Two component system sensor histidine kinase.
 
 
 0.499
CCK80167.1
Two component system sensor histidine kinase.
 
 
 0.498
CCK79562.1
Outer membrane efflux protein; Signal peptide.
     
 0.480
CCK79561.1
Uncharacterized protein.
       0.479
gspF-2
GspF: general secretion pathway protein F.
     
 0.444
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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