Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gcaGca: GDP-mannose 4,6-dehydratase. (321 aa)    
Predicted Functional Partners:
gmd
Gmd: GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
 
  
 
0.969
manC
ManC: mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.962
CCK81693.1
Cystathione beta-synthase modulated DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.932
algD
AlgD: GDP-mannose 6-dehydrogenase.
  
 
 0.914
CCK81671.1
Nucleotidyl transferase.
    
 0.912
gmd2
Gmd2: GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 
0.909
CCK81830.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
  
 0.893
CCK79572.1
Putative ABC transporter (type 2), peramease protein, putative function in lipopolysaccharide export.
 
  
 0.762
capF
CapF: capsular polysaccharide synthesis enzyme.
  
 
 0.640
CCK79573.1
Glycosyltransferase, family I.
  
 0.618
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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