Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCK79680.1Conserved uncharacterized protein. (453 aa)    
Predicted Functional Partners:
pfaA
PfaA: polyketide-type polyunsaturated fatty acid synthase.
   
 
 0.781
sbcD
SbcD: nuclease SbcCD, subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
  
   0.713
CCK81789.1
Predicted polyketide synthase.
 
 
 0.710
CCK80527.1
Conserved uncharacterized protein.
  
     0.680
CCK79679.1
AMP-dependent synthetase and ligase.
 
     0.669
CCK81002.1
Conserved uncharacterized protein.
  
     0.634
mrpA
MrpA: Na(+)/H(+) antiporter, subunit A (Multiple resistance and pH homeostasis protein A).
  
  
 0.562
sat
Sat: sulfate adenylyltransferase (ATP sulfurylase).
   
  
 0.541
CCK79924.1
Cytochrome c family protein; Signal peptide.
    
   0.536
CCK82545.1
Cyctchrome c, class III family protein; Signal peptide.
    
   0.536
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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