Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
CCK79780.1Conserved uncharacterized protein, DUF1732. (293 aa)    
Predicted Functional Partners:
gmk
Gmk: guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
 
    0.940
CCK79781.1
Conserved uncharacterized protein, DUF370; Belongs to the RemA family.
 
    0.926
CCK79779.1
Conserved uncharacterized protein.
       0.828
CCK79778.1
Conserved uncharacterized protein, DUF343; Belongs to the UPF0434 family.
       0.826
rlmB
RlmB: 23S rRNA (guanosine-2'-O-)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
 
    0.805
msbA
MsbA: lipid A export ATP-binding/permease protein; Signal peptide.
       0.761
CCK79784.1
Phosphoribosyl transferase.
 
     0.728
rpoZ
RpoZ: DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
  
 0.691
waaA2
WaaA2: 3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
 
     0.615
CCK81396.1
Predicted glutamate synthase, alpha subunit, C-terminal region.
  
    0.513
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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