STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmERpmE: 50S ribosomal protein L31; Binds the 23S rRNA. (72 aa)    
Predicted Functional Partners:
rpmB
RpmB: 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.987
rplM
RplM: 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.987
rpsT
RpsT: 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.987
rplU
RplU: 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.987
rpmA
RpmA: 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.987
rpsP
RpsP: 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.987
rpmF
RpmF: 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.987
rpmI
RpmI: 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
  
 
 0.986
rplT
RplT: 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.986
rpsI
RpsI: 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.986
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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