Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CCK79838.1Predicted uncharacterized ATP-dependent helicase. (426 aa)    
Predicted Functional Partners:
CCK79841.1
Uncharacterized protein.
     0.988
CCK79842.1
Putative DNA replication ATP-dependent helicase.
     0.983
CCK79839.1
Uncharacterized protein.
      0.957
CCK79840.1
Uncharacterized protein.
      0.953
CCK79837.1
Conserved uncharacterized protein.
 
 
   0.894
CCK79836.1
Conserved uncharacterized protein.
 
     0.864
rhlB
RhlB: ATP-dependent RNA helicase; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.
 
     0.672
CCK78289.1
Putative transposase, IS4-family.
  
     0.501
CCK80838.1
Predicted transposase, IS4 family.
  
     0.501
uvrC
UvrC: UvrABC system protein C (Excinuclease ABC subunit C); The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
   
    0.430
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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