Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
pilT3PilT3: twitchung motility proteIN. (400 aa)    
Predicted Functional Partners:
gspF
GspF: predicted general secretion pathway protein F.
 
  
 0.805
gspF-2
GspF: general secretion pathway protein F.
 
  
 0.805
pilC
PilC: type 4 fimbrial assembly protein.
 
  
 0.805
pilD
PilD: type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.780
CCK79866.1
Conserved uncharacterized protein.
     
 0.667
pilM
PilM: type IV pilus assembly protein.
 
   
 0.608
CCK79869.1
Conserved uncharacterized protein, UPF0213.
  
    0.553
CCK79868.1
Conserved uncharacterized protein, UPF0270.
       0.543
CCK78739.1
Uncharacterized protein, CheY-like receiver domain.
 
   
 0.474
comE
ComE: DNA internalization-related competence protein.
     
 0.472
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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