Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CCK79874.1Regulatory protein, FmdB family. (84 aa)    
Predicted Functional Partners:
CCK79873.1
Iron-sulfur cluster assembly protein, NifU-like.
  
    0.789
CCK79872.1
Uncharacterized transferase.
       0.741
CCK79871.1
Conserved uncharacterized protein.
       0.665
CCK79875.1
Predicted dinitrogenase iron-molybdenum cofactor biosynthesis protein.
  
    0.519
CCK79876.1
Predicted dinitrogenase iron-molybdenum cofactor biosynthesis protein.
  
    0.490
cbiA3
CbiA3: predicted cobyrinic acid a,c-diamide synthase.
       0.442
cbiA4
CbiA4: predicted cobyrinic acid a,c-diamide synthase.
       0.442
CCK79879.1
Response regulator receiver region protein.
       0.421
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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