Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dfxDfx: desulfoferredoxin. (126 aa)    
Predicted Functional Partners:
roo
Roo: rubredoxin-oxygen oxidoreductase.
 
  
 0.803
rrx2
Rrx2: predicted rubredoxin associated with rubredoxin-oxygen oxidoreductase Roo.
 
  
 0.790
rrx
Rrx: rubredoxin; Belongs to the rubredoxin family.
 
  
 0.789
rbr2
Rbr2: rubrerythrin.
 
  
 0.722
rbr
Rbr: rubrerythrin.
 
  
 0.709
CCK79898.1
Predicted flavodoxin/nitric oxide synthase.
  
  
 0.637
prxU
PrxU: selenocysteine-containing peroxiredoxin.
  
  
 0.555
aprB
AprB: adenylylsulfate reductase, beta subunit.
   
  
 0.545
cutA
CutA: divalent-cation tolerance protein.
   
    0.523
fur
Fur: ferric uptake regulator.
     
 0.509
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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