STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCK79908.1Phosphoesterase RecJ domain protein. (329 aa)    
Predicted Functional Partners:
CCK79907.1
Conserved uncharacterized protein; Signal peptide.
       0.786
CCK79909.1
Transcriptional regulator, PAS domain linked with LysR-type HTH domain.
       0.727
CCK79906.1
NAD-dependent epimerase/dehydratase.
       0.630
CCK80360.1
Putative organic solvent tolerance protein, related to OstA; Signal peptide.
  
     0.630
CCK79623.1
Putative metal-dependent phosphohydrolase.
 
   
 0.619
CCK79807.1
Conserved uncharacterized protein.
  
     0.614
rbfA
RbfA: ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
  
  
 0.572
dsrJ
DsrJ: predicted redox complex linked to DsrAB, cytochrome c subunit; Signal peptide.
  
     0.543
rrmJ
RrmJ: ribosomal RNA large subunit methyltransferase J (23S rRNA methylase); Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
  
     0.513
dsrP
DsrP: predicted redox complex linked to DsrAB, transmembrane subunit; Signal peptide.
  
     0.511
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.