Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gctA3GctA3: glutaconate CoA-transferase, subunit A. (256 aa)    
Predicted Functional Partners:
atoD
AtoD: acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
 0.999
gctA
GctA: Glutaconate CoA-transferase, subunit A.
 0.997
gctA2
GctA2: glutaconate CoA-transferase, subunit A.
 0.997
gctB
GctB: Glutaconate CoA-transferase, subunit B.
  
  
 
0.911
gctB2
GctB2: glutaconate CoA-transferase, subunit B.
  
  
 
0.911
fadB
FadB: 3-hydroxyacyl-CoA dehydrogenase, NAD-binding.
  
 0.777
CCK81980.1
Putative biotin/lipoyl attachment protein.
  
 
 0.503
clpP
ClpP: ATP-dependent Clp protease, proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
    
  0.494
iorB2
IorB2: indolepyruvate oxidoreductase, subunit B.
     
 0.424
gapN
GapN: NADP-dependent glycerinaldehyde-3-phsophate dehydrogenase.
  
 0.419
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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