Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cydBCydB: cytochrome d ubiquinol oxidase, subunit II; Signal peptide. (342 aa)    
Predicted Functional Partners:
cydA
CydA: cytochrome d ubiquinol oxidase subunit I; Signal peptide.
 0.999
CCK82486.1
ABC transporter, ATP-binding protein.
  
  
 0.929
flgH
FlgH: flagellar L-ring protein (basal body L-ring protein); Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
    
   0.637
flgF
FlgF: flagellar basal-body rod protein.
    
   0.637
fliQ
FliQ: flagellar biosynthesis protein, protein export component; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.
    
   0.637
CCK81047.1
NADH-quinone oxidoreductase, subunit F, N-terminal Fragment.
     
 0.542
bamH2
BamH2: NADH-quinone oxidoreductase, subunit F.
     
 0.542
CCK78909.1
4Fe-4S ferredoxin iron-sulfur binding domain protein; Signal peptide.
     
 0.462
guaA
GuaA: GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
     
 0.447
msrAB
MsrAB: peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
  
 0.431
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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