Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCK80238.1Conserved uncharacterized protein, DUF891. (117 aa)    
Predicted Functional Partners:
CCK80239.1
Conserved uncharacterized protein.
 
     0.956
CCK81561.1
Putative transcriptional regulator, Xre family.
 
   
 0.772
CCK81264.1
Predicted transcriptional regulator, XRE family.
 
   
 0.768
CCK79699.1
Transcriptional regulator, XRE family.
 
   
 0.737
CCK80216.1
Transcriptional regulator, XRE family.
 
   
 0.606
CCK81247.1
Transcriptional regulator, XRE family.
 
   
 0.606
CCK79097.1
CMP/dCMP deaminase zinc-binding; Signal peptide.
  
     0.482
CCK80237.1
Transposase, IS66 family.
       0.414
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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