Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lptBLptB: lipopolysaccharide export system, ATP-binding protein. (240 aa)    
Predicted Functional Partners:
CCK79406.1
Permease YjgP/YjgQ family protein.
 
 
 0.995
CCK79407.1
Permease YjgP/YjgQ family protein; Signal anchor.
 
 
 0.995
CCK80360.1
Putative organic solvent tolerance protein, related to OstA; Signal peptide.
  
  
 0.984
CCK80359.1
Conserved uncharacterized protein, DUF1239; Signal anchor.
    
  0.973
livM
LivM: high-affinity branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    
 0.905
livM2
LivM2: branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    
 0.892
modB3
ModB3: predicted molybdenum transport system permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
    
 0.892
kdsC
KdsC: 3-deoxy-D-manno-octulosonate 8-phosphatase.
 
  
 0.891
kdsA
KdsA: 2-dehydro-3-deoxyphosphooctonate aldolase; Belongs to the KdsA family.
 
  
 0.887
CCK78890.1
Uncharacterized ABC transporter, ATP-binding protein.
    
0.884
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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