Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
CCK80371.1Radical SAM domain protein, related to coenzyme PQQ biosynthesis protein E. (396 aa)    
Predicted Functional Partners:
CCK80585.1
Putative transcriptional regulator, AsnC family.
 
 0.992
CCK82394.1
Putative transcriptional regulator, AsnC family.
 
 0.989
ppqE
PqqE: predicted coenzyme PQQ synthesis protein E.
 
  
 
0.985
CCK82454.1
Predicted molybdenum cofactor biosynthesis protein, related to MoaA.
  
  
 
0.916
hemB
HemB: delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
  
  
 0.839
clpX-2
ClpX: ATP-dependent Clp protease, ATP binding subunit; Belongs to the ClpX chaperone family.
       0.828
CCK81993.1
Radical SAM domain protein.
  
     0.760
cobA
CobA: uroporphyrinogen-III C-methyltransferase.
  
 0.658
CCK78909.1
4Fe-4S ferredoxin iron-sulfur binding domain protein; Signal peptide.
  
  
 0.459
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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