STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemBHemB: delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. (324 aa)    
Predicted Functional Partners:
cobA
CobA: uroporphyrinogen-III C-methyltransferase.
 
 0.996
hemC
HemC: porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
 
 0.996
hemL2
HemL2: glutamate-1-semialdehyde 2,1-aminomutase.
 
 
 0.991
pat
Pat: predicted phenylalanine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.990
hemA
HemA: glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
  
 0.879
clpX-2
ClpX: ATP-dependent Clp protease, ATP binding subunit; Belongs to the ClpX chaperone family.
   
 
 0.846
CCK80371.1
Radical SAM domain protein, related to coenzyme PQQ biosynthesis protein E.
  
  
 0.841
ppqE
PqqE: predicted coenzyme PQQ synthesis protein E.
  
  
 0.841
atpD
AtpD: ATP synthase, subunit beta (F-ATPase subunit beta) (ATP synthase F1 sector subunit beta); Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
 
    
 0.742
CCK79033.1
Siroheme synthase.
 
   
 0.731
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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