Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCK80397.1Peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (321 aa)    
Predicted Functional Partners:
CCK79732.1
Peptide ABC transporter, permease protein.
 
 0.992
CCK82059.1
Predicted oligopeptide/dipeptide ABC transporter, permease protein; Signal anchor.
 
 0.981
oppC
OppC: oligopeptide transport system, permease; Signal anchor.
     0.975
CCK80395.1
Predicted peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
0.945
CCK82058.1
Predicted oligopeptide/dipeptide ABC transporter, permease protein; Signal peptide.
 
 0.923
CCK79733.1
Peptide ABC transporter, permease protein.
 
 0.922
CCK80739.1
ABC-type transporter, inner membrane component; Signal anchor.
     0.905
CCK79671.1
ABC-type dipeptide transport system, periplasmic component.
 
 
 0.883
gsiB
GsiB: predicted glutathione-binding protein gsiB; Signal peptide.
 
 
 0.881
gsiB2
GsiB2: glutathione-binding protein, precursor; Signal peptide.
 
 
 0.877
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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