Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCK80402.1Tetratricopeptide domain protein. (760 aa)    
Predicted Functional Partners:
gumC1
Lipopolysaccharide biosynthesis protein.
 
     0.786
CCK79243.1
Tetratricopeptide repeat protein.
 
 
 0.679
CCK79446.1
Fusion protein (methyltransferase type 12 and tetratricopeptide TPR-1+TPR-2).
 
   
 0.671
epsHI
EpsHI: exosortase I fusion protein.
 
     0.668
CCK81679.1
Conserved uncharacterized protein.
 
     0.654
CCK78936.1
Tetratricopeptide repeat protein, presursor; Signal peptide.
 
     0.617
CCK82201.1
Conserved uncharacterized protein.
 
     0.603
CCK80399.1
Outer membrane protein, related to OmpA/MotB.
 
  
 0.593
CCK80436.1
Type II and III secretion system protein; Signal peptide; Belongs to the bacterial secretin family.
  
 
 0.576
CCK80492.1
Polysaccharide deacetylase.
 
   
 0.575
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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