Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CCK80433.1TadE family protein; Signal anchor. (148 aa)    
Predicted Functional Partners:
CCK80431.1
Putative response regulator protein.
 
  
 0.983
cpaB
CpaB: Flp pilus assembly protein; Signal peptide.
 
  
 0.966
CCK80429.1
Type II secretion system protein.
 
  
 0.963
CCK80430.1
Type II secretion system protein E.
 
  
 0.950
CCK80432.1
Uncharacterized protein.
 
     0.949
CCK80428.1
Predicted type II secretion system protein; Signal peptide.
 
    0.943
CCK80436.1
Type II and III secretion system protein; Signal peptide; Belongs to the bacterial secretin family.
 
  
 0.927
cpaA
CpaA: Flp pilus assembly protein, protease; Signal anchor.
 
     0.878
CCK81598.1
Type II secretion system protein E.
 
  
 0.873
CCK80434.1
Putative TadE family protein; Signal peptide.
 
    
0.743
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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