Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
asrA1AsrA1: predicted anaerobic sulfite reductase, subunit A. (350 aa)    
Predicted Functional Partners:
asrB1
AsrB1: predicted anaerobic sulfite reductase, subunit B.
   
 0.989
asrB2
AsrB2: predicted anaerobic sulfite reductase, subunit B.
   
 0.959
CCK80581.1
Predicted coenzyme F420 hydrogenase/dehydrogenase, beta subunit.
 
 
 0.946
qmoB
QmoB: predicted quinone interacting membrane bound oxidoreductase, subunit B.
  
 
 0.866
mvhD5
MvhD5: methyl-viologen-reducing hydrogenase, delta subunit.
 
 
 0.832
CCK81038.1
4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
   
 0.812
CCK79329.1
4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
   
 0.710
hdlA6
HdlA6: heterodisulfide reductase-like protein, iron-sulfur subunit.
  
 
 0.708
CCK79950.1
Coenzyme F420 hydrogenase/dehydrogenase, subunit B.
  
     0.637
pyrK
PyrK: dihydroorotate dehydrogenase electron transfer subunit.
   
 0.615
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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