Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
comEComE: DNA internalization-related competence protein. (810 aa)    
Predicted Functional Partners:
dprA
DprA: DNA protecting protein A.
 
  
 0.926
CCK79784.1
Phosphoribosyl transferase.
 
  
 0.916
CCK80589.1
Conserved uncharacterized protein.
       0.789
pilD
PilD: type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
  
 0.756
cpaA
CpaA: Flp pilus assembly protein, protease; Signal anchor.
  
  
 0.756
CCK81343.1
Conserved uncharacterized protein; Signal peptide.
 
  
 0.750
CCK81529.1
CMP/dCMP deaminase zinc-binding.
  
  
 0.736
pilB
PilB: type IV pilus asse,nly protein.
  
  
 0.735
gspF
GspF: predicted general secretion pathway protein F.
  
  
 0.729
gspF-2
GspF: general secretion pathway protein F.
  
  
 0.729
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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