Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
pilBPilB: type IV pilus asse,nly protein. (734 aa)    
Predicted Functional Partners:
gspF
GspF: predicted general secretion pathway protein F.
 
 
 0.934
gspF-2
GspF: general secretion pathway protein F.
 
 
 0.934
pilC
PilC: type 4 fimbrial assembly protein.
 
 
 0.934
pilD
PilD: type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.852
CCK80607.1
Uncharacterized protein; Signal anchor.
       0.772
gspG
GspG: general secretion pathway protein G; Signal anchor.
 
 
 0.756
CCK80608.1
Uncharacterized ABC transporter, ATP-binding protein.
     
 0.746
comE
ComE: DNA internalization-related competence protein.
  
  
 0.735
CCK82273.1
Two component system sensor histidine kinase, hybrid.
  
 
 0.735
rpoB
RpoB: DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.719
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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