Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
helYHelY: DNA/RNA helicase. (707 aa)    
Predicted Functional Partners:
CCK80625.1
Uncharacterized ABC transporter, ATP-binding protein, associated with toluene tolerance protein.
 
     0.685
glmS
GlmS: glucosamine--fructose-6-phosphate aminotransferase.
  
     0.632
CCK79216.1
Conserved uncharacterized protein.
  
     0.598
hrpA
HrpA: ATP-dependent RNA helicase.
 
     0.578
plsB
PlsB: glycerol-3-phosphate acyltransferase; Belongs to the GPAT/DAPAT family.
  
     0.562
rnd
Rnd: ribonuclease D.
  
     0.548
CCK80424.1
Conserved uncharacterized protein; Signal peptide.
  
     0.543
CCK80280.1
Conserved uncharacterized protein.
  
     0.525
CCK79507.1
Conserved uncharacterized protein.
  
     0.494
cbiA
CbiA: hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
   
    0.490
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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