Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
xerD2XerD2: tyrosine recombinase, subunit D. (302 aa)    
Predicted Functional Partners:
CCK80757.1
Integrase/recombinase, XerC/CodV family.
 
    
0.840
xerC4
XerC4: tyrosine recombinase, subunit C.
 
    
0.837
CCK80034.1
Integrase family protein; Belongs to the 'phage' integrase family.
  
   
 0.744
CCK79427.1
Putative integrase.
  
     0.737
CCK78375.1
Putative tyrosine recombinase (Fragment); Belongs to the 'phage' integrase family.
  
     0.586
CCK80758.1
Uncharacterized protein.
       0.568
CCK82404.1
Integrase; Belongs to the 'phage' integrase family.
  
   
 0.496
ftsK-2
FtsK: DNA translocase; Belongs to the FtsK/SpoIIIE/SftA family.
  
   
 0.456
CCK81564.1
Integrase family protein; Belongs to the 'phage' integrase family.
  
     0.435
CCK79784.1
Phosphoribosyl transferase.
   
    0.430
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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