Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
CCK80795.1Transcriptional regulator, sigma54-dependent. (519 aa)    
Predicted Functional Partners:
rpoN
RpoN: RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.749
CCK78637.1
Predicted two component system sensor kinase, hybrid.
   
 
 0.746
CCK79259.1
Two component system sensor histidine kinase, hybrid.
   
 
 0.746
CCK82245.1
Two component system sensor histidine kinase, hybrid.
    
 
 0.716
CCK82273.1
Two component system sensor histidine kinase, hybrid.
   
 
 0.709
CCK80539.1
Two component system sensor histidine kinase, hybrid.
    
 
 0.670
CCK82091.1
Two component system sensor histidine kinase, hybrid.
    
 
 0.670
CCK82094.1
Two component system sensor histidine kinase, hybrid.
    
 
 0.670
CCK82193.1
Two component system sensor histidine kinase, hybrid.
    
 
 0.670
CCK82303.1
Two component system sensor histidine kinase, hybrid.
    
 
 0.670
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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