Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCK81062.1Uncharacterized protein; Signal peptide. (98 aa)    
Predicted Functional Partners:
CCK81061.1
Fibronectin type III domain protein; Signal peptide.
       0.723
CCK81060.1
Tetratricopeptide repeat domain protein.
       0.717
CCK81059.1
Conserved uncharacterized protein.
       0.684
CCK81063.1
Two component system response regulator, OmpR family, related to CopR.
       0.618
CCK81064.1
Two component system sensor histidine kinase, related to CopS; Signal peptide.
       0.618
CCK81058.1
Conserved uncharacterized protein; Signal peptide.
       0.541
degP
DegP: serine protease, do-like; Belongs to the peptidase S1C family.
       0.460
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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