Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fdhA3FdhA3: formate dehydrogenase, subunit A; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1030 aa)    
Predicted Functional Partners:
fdhB
FdhB: formate dehydrose, subunit B.
 0.998
CCK79930.1
4Fe-4S ferredoxin iron-sulfur binding domain protein; Signal peptide.
 
 0.981
hmcB
HmcB: HMC redox complex, transmembrane protein; Signal peptide.
 
 0.980
fdhE
FdhE: predicted formate dehydrogenase accessory protein; Necessary for formate dehydrogenase activity. Belongs to the FdhE family.
 
 
 0.945
fdhA2
FdhA2: formate dehydrogenase, subunit A.
 
 
0.915
CCK79950.1
Coenzyme F420 hydrogenase/dehydrogenase, subunit B.
 
  
 0.914
rnfB
RnfB: predicted electron transport protein RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
    
 0.910
CCK78214.1
Predicted 4Fe-4S ferredoxin, predicted function in phenylacetaldehyde oxidation.
 
 0.908
fwdE
FwdE: formylmethanofuran dehydrogenase, subunit E.
   
 
  0.905
fwdE2
FwdE2: formlmethanofuran dehydrogenase, subunit E.
   
 
  0.905
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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