Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
korB3KorB3: 2-oxoglutarate synthase, subunit B. (268 aa)    
Predicted Functional Partners:
korA3
KorA3: 2-oxoglutarate synthase, alpha subunit.
 
 0.999
nifJ
NifJ: pyruvate-flavodoxin oxidoreductase.
  
 0.997
korA2
KorA2: 2-oxoglutarate synthase, subunit A.
 0.995
korA4
KorA4: 2-oxoglutarate synthase, alpha subunit.
 0.995
korA
KorA: 2-oxoglutarate synthase, alpha subunit (2-ketoglutarate oxidoreductase alpha chain).
 
 0.993
korB2
KorB2: 2-oxoglutarate synthase, subunit B.
 
0.967
padG1
PadG1: phenylglyoxylate:acceptor oxidoreductase, subunit G.
 
 0.937
pycB
PycB: pyruvate carboxylase, subunit B.
  
 
 0.921
korB
KorB: 2-oxoglutarate synthase, beta subunit (2-ketoglutarate oxidoreductase beta chain).
  
  
 
0.919
pyk
Pyk: pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.919
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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