Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCK81239.1Lysine exporter protein (LYSE/YGGA); Signal peptide. (204 aa)    
Predicted Functional Partners:
CCK79086.1
Putative transcriptional regulator, AraC family.
 
     0.441
CCK81452.1
Transcriptional regulator, AraC family.
 
     0.441
CCK78223.1
Preditced transcriptional regulator, AraC family.
 
     0.435
CCK82340.1
Transcriptional regulator, AraC family.
 
     0.417
CCK81399.1
CheC domain protein.
    
   0.405
CCK79136.1
Putative sensor protein, fragment.
  
     0.404
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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