Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pycBPycB: pyruvate carboxylase, subunit B. (672 aa)    
Predicted Functional Partners:
oadB
OadB: oxaloacetate decarboxylase, beta chain.
 
 
 0.998
CCK78490.1
Uncharacterized protein; ATP-grasp fold.
  
 
 0.994
pyc
Pyc: pyruvate carboxylase.
 
 
0.962
nifJ
NifJ: pyruvate-flavodoxin oxidoreductase.
  
 
 0.959
pyk
Pyk: pyruvate kinase; Belongs to the pyruvate kinase family.
  
 
 0.956
mdh
Mdh: malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
    
 0.952
mdh2
Mdh2: malate dehydrogenase; Belongs to the LDH/MDH superfamily.
    
 0.952
korB2
KorB2: 2-oxoglutarate synthase, subunit B.
  
 
 0.947
korA3
KorA3: 2-oxoglutarate synthase, alpha subunit.
  
 
 0.946
gltA
GltA: citrate synthase; Belongs to the citrate synthase family.
  
 
 0.938
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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