STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dapBDapB: dihydrodipicolinate reductase; Belongs to the DapB family. (277 aa)    
Predicted Functional Partners:
dapA
DapA: dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
 
 
 0.975
dapL
DapL: LL-diaminopimelate aminotransferase (LL-DAP-aminotransferase); Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate.
 
  
 0.938
CCK81307.1
DnaJ domain heat shock protein; Signal peptide.
  
  
 0.863
CCK81305.1
Predicted aminoglycoside phosphotransferase.
  
    0.804
CCK81308.1
Alpha/beta hydrolase fold protein.
 
   
 0.796
CCK80169.1
Predicted polyA polymerase family protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
    0.765
plsB
PlsB: glycerol-3-phosphate acyltransferase; Belongs to the GPAT/DAPAT family.
       0.761
thrC
ThrC: threonine synthase.
 
  
 0.738
birA2
BirA2: biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
  
 0.730
cca
Cca: predicted CCA-adding enzyme (tRNA nucleotidyltransferase); Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
    0.717
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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