Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CCK81357.1Xylose isomerase domain protein, TIM barrel. (305 aa)    
Predicted Functional Partners:
phnM
PhnM: phopsphonate metabolism protein, predicted C-P lyase subunit.
 
     0.699
phnL
PhnL: phosphonate transport ATP-binding protein.
 
     0.619
CCK79841.1
Uncharacterized protein.
  
     0.599
phnD-2
PhnD: phosphonates-binding periplasmic protein; Signal peptide.
 
     0.585
phnI
PhnI: phopsphonate metabolism protein, predicted C-P lyase subunit.
 
     0.549
phnH
PhnH: phopsphonate metabolism protein, predicted C-P lyase subunit.
 
     0.543
phnE
PhnE: predicted phosphonate transport system, permease protein; Signal peptide.
       0.540
phnJ
PhnJ: phopsphonate metabolism protein, predicted C-P lyase subunit; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
 
     0.537
CCK79837.1
Conserved uncharacterized protein.
  
     0.524
CCK79842.1
Putative DNA replication ATP-dependent helicase.
  
    0.512
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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