Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
exbBExbB: biopolymer transport protein; Signal anchor. (195 aa)    
Predicted Functional Partners:
exbD
ExbD: biopolymer transport protein; Signal anchor.
 
 
 0.983
tonB
TonB: TonB family protein, associated with ExbBD; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.958
CCK81585.1
Biopolymer transport protein ExbD/TolR; Signal anchor.
 
 
 0.929
CCK82118.1
Predicted biopolymer transport protein related to ExbD; Signal anchor.
 
 
 0.926
CCK81441.1
Conserved uncharacterized protein; Signal peptide.
 
    0.898
tolR
TolR: biopolymer transport protein; Signal peptide.
 
 
 0.860
CCK81586.1
Predicted TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.848
CCK81446.1
Tetratricopeptide repeat protein; Signal peptide.
 
    0.826
CCK81442.1
MotA/TolQ/ExbB proton channel; Signal peptide.
 
    
0.806
lptB
LptB: lipopolysaccharide export system, ATP-binding protein.
 
   
 0.717
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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