CCK81472.1 protein (Desulfobacula toluolica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCK81472.1

Conserved uncharacterized protein; Signal peptide. (262 aa)

Predicted Functional Partners:

CCK80461.1

0.969

CCK81470.1

0.935

CCK81471.1

0.932

CCK82308.1

0.888

CCK82468.1

0.848

CCK80464.1

0.777

CCK82466.1

0.777

CCK82309.1

0.774

CCK80627.1

0.755

CCK78892.1

0.731

Your Current Organism:

Desulfobacula toluolica

NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCK78892.1	CCK81472.1	TOL2_C07240	TOL2_C33150	Putative permease; Signal anchor.	Conserved uncharacterized protein; Signal peptide.	0.731
CCK80461.1	CCK80464.1	TOL2_C23000	TOL2_C23030	Conserved uncharacterized protein.	Uncharacterized protein.	0.881
CCK80461.1	CCK81471.1	TOL2_C23000	TOL2_C33140	Conserved uncharacterized protein.	Conserved uncharacterized protein.	0.783
CCK80461.1	CCK81472.1	TOL2_C23000	TOL2_C33150	Conserved uncharacterized protein.	Conserved uncharacterized protein; Signal peptide.	0.969
CCK80461.1	CCK82309.1	TOL2_C23000	TOL2_C41530	Conserved uncharacterized protein.	Conserved uncharacterized protein; Signal peptide.	0.771
CCK80461.1	CCK82466.1	TOL2_C23000	TOL2_C43100	Conserved uncharacterized protein.	Uncharacterized protein; Signal peptide.	0.696
CCK80464.1	CCK80461.1	TOL2_C23030	TOL2_C23000	Uncharacterized protein.	Conserved uncharacterized protein.	0.881
CCK80464.1	CCK81470.1	TOL2_C23030	TOL2_C33130	Uncharacterized protein.	Putative membrane protein.	0.755
CCK80464.1	CCK81472.1	TOL2_C23030	TOL2_C33150	Uncharacterized protein.	Conserved uncharacterized protein; Signal peptide.	0.777
CCK80464.1	CCK82308.1	TOL2_C23030	TOL2_C41520	Uncharacterized protein.	Conserved uncharacterized membrane protein.	0.507
CCK80464.1	CCK82466.1	TOL2_C23030	TOL2_C43100	Uncharacterized protein.	Uncharacterized protein; Signal peptide.	0.659
CCK80464.1	CCK82468.1	TOL2_C23030	TOL2_C43120	Uncharacterized protein.	Conserved uncharacterized membrane protein.	0.747
CCK80627.1	CCK81471.1	TOL2_C24660	TOL2_C33140	Predicted integral membrane protein, associated with toluene tolerance protein.	Conserved uncharacterized protein.	0.641
CCK80627.1	CCK81472.1	TOL2_C24660	TOL2_C33150	Predicted integral membrane protein, associated with toluene tolerance protein.	Conserved uncharacterized protein; Signal peptide.	0.755
CCK80627.1	CCK82309.1	TOL2_C24660	TOL2_C41530	Predicted integral membrane protein, associated with toluene tolerance protein.	Conserved uncharacterized protein; Signal peptide.	0.630
CCK80627.1	CCK82466.1	TOL2_C24660	TOL2_C43100	Predicted integral membrane protein, associated with toluene tolerance protein.	Uncharacterized protein; Signal peptide.	0.549
CCK81470.1	CCK80464.1	TOL2_C33130	TOL2_C23030	Putative membrane protein.	Uncharacterized protein.	0.755
CCK81470.1	CCK81471.1	TOL2_C33130	TOL2_C33140	Putative membrane protein.	Conserved uncharacterized protein.	0.923
CCK81470.1	CCK81472.1	TOL2_C33130	TOL2_C33150	Putative membrane protein.	Conserved uncharacterized protein; Signal peptide.	0.935
CCK81470.1	CCK82309.1	TOL2_C33130	TOL2_C41530	Putative membrane protein.	Conserved uncharacterized protein; Signal peptide.	0.775

page 1 of 4

Network Stats

number of nodes:

11

number of edges:

38

average node degree:

6.91

avg. local clustering coefficient:

0.814

expected number of edges:

45

PPI enrichment p-value:

0.847

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006631

Fatty acid metabolic process

6 of 202

1.63

2.05

7.83e-06

GO:0006633

Fatty acid biosynthetic process

4 of 94

1.79

1.67

0.00027

GO:0140647

P450-containing electron transport chain

2 of 2

3.16

1.62

0.0012

GO:0022900

Electron transport chain

3 of 64

1.83

1.22

0.0036

GO:0043436

Oxoacid metabolic process

7 of 753

1.13

1.08

0.00020

(more ...)

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005739

Mitochondrion

6 of 1016

0.93

0.57

0.0213

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:12443

Mixed, incl. Pigmentation, and Lipoate metabolic process

3 of 5

2.94

2.47

3.21e-05

CL:13478

Mixed, incl. Fatty acid beta-oxidation, and Ketone body metabolism

3 of 69

1.8

1.09

0.0067

CL:13568

Protein import into peroxisome matrix, and Thiolase, conserved site

2 of 12

2.38

1.08

0.0105

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00061

Fatty acid biosynthesis

2 of 44

1.82

0.85

0.0228

map00190

Oxidative phosphorylation

3 of 145

1.47

0.81

0.0192

map01212

Fatty acid metabolism

3 of 177

1.39

0.78

0.0192

map00860

Porphyrin and chlorophyll metabolism

2 of 62

1.67

0.75

0.0331

map01100

Metabolic pathways

8 of 3914

0.47

0.31

0.0342

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-2395516

Electron transport from NADPH to Ferredoxin

2 of 3

2.98

1.52

0.0018

MAP-8978868

Fatty acid metabolism

5 of 283

1.4

1.24

0.00078

MAP-1362409

Mitochondrial iron-sulfur cluster biogenesis

2 of 12

2.38

1.15

0.0076

MAP-556833

Metabolism of lipids

6 of 933

0.97

0.73

0.0037

MAP-1430728

Metabolism

9 of 2618

0.69

0.54

0.0018

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0275

Fatty acid biosynthesis

2 of 6

2.68

1.38

0.0030

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM01117

Cytochrome b5-like Heme/Steroid binding domain

2 of 21

2.14

0.78

0.0365

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About