Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCK81564.1Integrase family protein; Belongs to the 'phage' integrase family. (351 aa)    
Predicted Functional Partners:
CCK82426.1
Integrase; Belongs to the 'phage' integrase family.
  
     0.584
CCK80197.1
Predicted integrase; Belongs to the 'phage' integrase family.
  
     0.582
CCK80199.1
Predicted integrase; Belongs to the 'phage' integrase family.
  
     0.580
CCK80212.1
Predicted integrase.
  
     0.580
CCK80183.1
Predicted integrase; Belongs to the 'phage' integrase family.
  
     0.571
CCK80192.1
Predicted integrase.
  
     0.571
CCK80249.1
Predicted integrase.
  
     0.571
CCK80780.1
Integrase/recombinase protein.
  
     0.571
CCK81242.1
Integrase.
  
     0.571
xerD3
XerD3: tyrosine recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
     0.480
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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