Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CCK81693.1Cystathione beta-synthase modulated DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (492 aa)    
Predicted Functional Partners:
gmd2
Gmd2: GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
 
 0.984
gca
Gca: GDP-mannose 4,6-dehydratase.
  
 
 0.932
gmd
Gmd: GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
 
 0.932
neuB
NeuB: N-acetylneuraminate synthase.
 
  
 0.903
CCK81830.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
  
 0.887
CCK81696.1
GCN5-related N-acetyltransferase.
 
 
 0.839
neuA
NeuA: N-acetylneuraminate cytidylyltransferase.
  
  
 0.837
rplF
RplF: 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
   0.792
CCK81699.1
Methyltransferase, type 11.
     
 0.792
capF
CapF: capsular polysaccharide synthesis enzyme.
  
 
 0.789
Your Current Organism:
Desulfobacula toluolica
NCBI taxonomy Id: 651182
Other names: D. toluolica Tol2, Desulfobacula toluolica DSM 7467, Desulfobacula toluolica Tol2, Desulfobacula toluolica str. Tol2, Desulfobacula toluolica strain Tol2
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